Molecular Detection of Virulence Genes Associated with Pathogenicity of Klebsiella spp. Isolated from the Respiratory Tract

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Molecular Detection of Virulence Genes Associated with Pathogenicity of Klebsiella spp. Isolated from the Respiratory Tract of Apparently Healthy as well as Sick Goats
Aher, T.,* Roy, A. and Kumar, P.
Department of Veterinary Microbiology, College of Veterinary Science and Animal Husbandry, Anand Agricultural University, Anand- 388001. (Gujarat) India.
* Corresponding author: Email: drtusharaher@yahoo.in; Cellular phone: 09922724213
AB ST RAC T
In the present study, 102 nasal swabs and 96 tissue samples were collected from apparently healthy as well as sick goats. All of these samples were screened for the presence of microbial pathogens by cultural isolation and PCR. Out of 144 isolates obtained, 8 isolates (5.6%) were confirmed as Klebsiella spp., on the basis of mucoid colony production and biochemical characteristics. Isolates were screened for the presence of magA (mucoviscosity associated gene), uge (uridine diphosphate galacturonate 4-epimerase gene) and kfu (iron uptake system gene) gene by PCR using specific primers, which yielded specific PCR products of 1280 bp, 534 bp and 797 bp, respectively. The magA, uge and kfu gene were amplified in one, five and two isolates out of eight isolates of Klebsiella spp. The presence of these genes confirmed the pathogenic potential of Klebsiella spp. isolates and their possible association with clinical manifestations in respiratory tract infections of goats. Key Words: Klebsiella spp., Respiratory tract, Biochemical characteristics, Virulence genes, PCR.
Klebsiella species are gram negative, medium sized rods (0.40.6 x 2-3 µm). They are facultative anaerobic, fermentative, catalase positive, oxidase negative lactose fermenters, reduce nitrate to nitrite and are motile by peritrichous flagella. They are capable of growth on non-enriched media such as nutrient agar and produce pale pink mucoid colonies on MacConkey agar (1). Klebsiella pneumoniae is a common opportunistic pathogen of community-acquired and nosocomial infections (2). They cause a wide spectrum of infections, such as coliform mastitis in cattle, cervicitis and metritis in the mare, urinary tract infections in dogs and pneumonia and suppurative infections in foals including meningitis, and purulent abscesses at various sites, especially in the liver. In particular, it is also associated with a distinctive clinical syndrome, which is characterized by community-acquired K. pneumoniae bacteremia with primary liver abscesses, metastatic meningitis and endophthalmitis (3). Furthermore, a
Israel Journal of Veterinary Medicine  Vol. 67 (4)  December 2012
INTRODUCTION
novel chromosomal gene, magA (mucoviscosity-associated gene A), causes hypermucoviscosity, as defined by positive results in the string test of mucoviscosity (4). K. pneumoniae typically expresses a smooth lipopolysaccharide (LPS with O antigen) and capsule polysaccharide (K antigen) on its surface, both contributing to the pathogenesis of diseases caused by this species (5, 6, 7). They produce virulence factors such as adhesin for attachment to host cells, capsules that are antiphagocytic, siderophores that aid the bacterium in its competition with the host for iron and various endotoxins (1). These species produce mucoid colonies on primary isolation which is indicative of the presence of a large capsule surrounding the individual cells (8). In this study, the isolates were screened for the presence of magA (mucoviscosity associated gene), uge (uridine diphosphate galacturonate 4-epimerase gene) and kfu (iron uptake system gene). These factors contribute to virulence and are responsible for colonization, invasion and pathogeKlebsiella spp. in the Respiratory Tract of Goats
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nicity. The magA gene is part of the capsular polysaccharide gene cluster of K. pneumoniae serotype K1 and contributes to the bacteria's virulence (2). The uge gene codes for uridine diphosphate galacturonate 4-epimerase, express both smooth lipopolysaccharide (LPS) with O antigen molecules and capsule polysaccharide (K antigen) on the surface, therefore, is essential for K. pneumoniae virulence (9). The kfu gene which codes for an iron uptake system is a putative pathogenic gene, significantly associated with the virulent hypermucoviscosity phenotype and purulent tissue infections (10). In addition to these, it produces several other extracellular virulence factors which affect the host cell metabolism. In the present study, the animals were screened for respiratory tract infections caused by Klebsiella spp. by cultural and molecular techniques. To study their possible role in pathogenesis, the isolates were also examined for the presence of various virulence associated genes by PCR as well as their biochemical characteristics.
farms and a local meat market and transported to the laboratory on ice. All the samples were processed and screened for possible microbial pathogens.
Cultural isolation of the organisms
Bacterial isolation was carried out following standard techniques (1) by inoculating tissue samples and nasal swabs primarily on blood agar plates (HiMedia, India) and incubated for 24-48 hrs at 37oC. After incubation, the nature of growth and cultural characters of colonies were studied. Preliminary morphological identification was done based on Gram’s staining. Cultural characteristics of the isolates were further studied on MacConkey agar (HiMedia, India).
Biochemical identification of Klebsiella spp.
Sample collection
MATERIALS AND METHODS
A total of 102 nasal swab and 96 tissue samples from apparently healthy and sick goats were collected from established
Primarily the isolates were characterized by KOH, catalase, oxidase and O-F tests (1). Following primary biochemical tests, the isolates were characterized by various secondary biochemical tests (11). Secondary biochemical tests includes indole test, methyl-red (MR) test, Voges-Proskauer (VP) test, citrate utilization test, urease test, string test for mucoviscosity, hydrogen sulphide production on TSI agar and carbohydrate fermentation test.
Table 1: Primers used for amplification of virulence genes of Klebsiella spp. Primers magA F magA R uge F uge R kfu F kfu R Sequences (5’- 3’) Target Gene magA uge kfu Size of amplified product (bp) 1280 534 797 Reference (2) (9) (10)
GGT GCT CTT TAC ATC ATT GC GCA ATG GCC ATT TGC GTT AG TCT TCA CGC CTT CCT TCA CT GAT CAT CCG GTC TCC CTG TA GAA GTG ACG CTG TTT CTG GC TTT CGT GTG GCC AGT GAC TC
magA, mucoviscosity associated gene; uge, Uridine diphoshate galacturonate 4-epimerase gene; kfu, Iron uptake system gene. Primers (forward and reverse) magA F magA R Uge F Uge R kfuF kfuR Table 2: Cycling condition for PCR Initial denaturation 94 C 1min
o
Denaturation 94 C 30sec
o
Cycling conditions Annealing
o
94oC 5min 94oC 5min
94oC 60sec 94oC 60sec
59 C 45sec Repeated for 30cycles 54oC 45sec Repeated for 35cycles 54oC 45sec
Extension 74 C 2min
o
Final extension 72oC 6min 72oC 7min 72oC 7min
72oC 60sec 72oC 60sec
Repeated for 35cycles
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Test
Table 3: Specific Identification of Klebsiella spp. isolatesCharacteristics Lactose fermenting colonies -ve -ve +ve +ve +ve Yellow/Yellow/H2S+ve -ve
MacConkey Agar Indole test Methyl Red test Voges-Proskeur test Citrate utilization test Urease test Triple Sugar Iron agar slant String test for mucoviscosity Gelatine liquefaction test
Name of gene
Table 4: Molecular Characterization of Klebsiella isolatesNo. of isolates positive 1 5 2 12.5% 62.5% 25%
In percentage
magA (1250 bp) uge (534 bp) kfu (797 bp)
on the basis of fragment size shown in Table 1 and the cyclic conditions for PCR are explained in table 2. RESULTS AND DISCUSSION
DNA Extraction
The template DNA from the colony was prepared (12) with minor modifications. Briefly, from the culture plate, bacterial colonies were picked and suspended in 100 µl mili-Q water (Manufacturer- MILLIPORE, Method- REVERSE OSMOSIS). The samples were boiled for 15 min, cell debris was removed by centrifugation at 5000 rpm and the supernatant was collected and used as a template DNA.
PCR was carried out with template DNA (3 µl), forward and reverse primers (1 µl), 12.5 µl of master mix (2x) (Fermentas, India) and 7.5 µl DNase Free Water (Fermentas, India) in a total volume of 25 µl. The DNA was amplified using the specific cycling conditions (Table 2). PCR products were separated in 1.5% agarose gel (HiMedia, India) for 90 min at 80 V, stained with ethidium bromide (1%) (Sigma, India) added at 0.5 µl/100ml and detected by UV transillumination (wavelength 312 nm). Amplified genes were identified
Polymerase chain reaction (PCR) for amplification of virulence associated genes:
Confluent growth on blood agar medium was inoculated onto MacConkey agar, where lactose fermenting mucoid colonies producing pink discoloration of the medium was further tested. These isolates were positive for urease production and citrate utilization and negative on gelatine stab and acidic reaction on triple sugar iron agar slant. The isolates were negative for H2S production, on TSI agar slant. After primary biochemical identification, the isolates were found positive for KOH, catalase and negative for oxidase reaction and showed a fermentative reaction in the O-F test (Table 3). In the present study, the prevalence of Klebsiella spp. was found to be 5.6%. Higher prevalence of Klebsiella spp. has been reported (13, 14 and 15). A low prevalence of Klebsiella spp. has also been reported (16) at the rate of 1.3%. In the present study, magA, uge and kfu genes were detected by PCR using specific primer sequences which yielded product sizes of 1280 bp, 534 bp and 797 bp, respectively (Table 4). Out of total 8 isolates, 1 isolate (12.5%) was positive for magA gene (Figure 1), 5 isolates (62.5%) were positive for uge gene (Figure 2) and 2 isolates (25%) were positive for kfu gene (Figure 3).
Figure 1
Figure 2
Figure 3 Klebsiella spp. in the Respiratory Tract of Goats
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Figure 4
The results of the present study are in agreement with reports of (2, 9, 10 and 4) who designed these oligos complementary to each end of the sequence of the magA, uge and kfu genes which specifically amplified the product size of 1250 bp, 534 bp and 797 bp, respectively. The prevalence of virulence associated genes viz., magA, uge and kfu genes were found at the rate of 12.5%, 62.5% and 25%, respectively, which is in contrast with the reports of (4) who detected prevalence at the rate of 29%, 96% and 35%, respectively. In the present study, string test of hypermucoviscosity (Fig. 4) was positive in all isolates but only one isolate was positive for magA gene amplification. Thus hypermucoviscosity was not confined to magA positive isolates. These results were also in agreement with one report (17). Detection of these genes may indicate the virulence potential of the isolates. Consequently, although the prevalence rate of the organism in the respiratory tract infections is low, the presence of the virulence associated genes provides them considerable pathogenic potential in the cases where the host is immunocompromised. The molecular detection of these genes provides an avenue for early diagnosis of the infection from susceptible hosts. In view of all the findings, further investigation is needed to define the role of other host and pathogen factors which may assist in the progression of disease at the physiological and molecular levels.
ACKNOWLED GEMENT The authors are thankful to the Dean, College of Veterinary Science and Animal Husbandry, Anand (Gujarat) for providing the facilities to pursue this work.
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